Comparative Fermentable Sugar Yield from Pretreated Rice Straw by Trichoderma reseei and Aspergillus tamarii Using Plackett–Burman Method

Vikas Chandra Gupta1*, Meenu Singh1 and Shiv Prasad2

1IILM-College of Engineering and Technology, Greater Noida 201306, U.P., India

2Centre for Environment Science and Climate Resilient Agriculture, IARI, New Delhi 110012, India

Corresponding author email: vikas.gupta@iilmcet.ac.in

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ABSTRACT:

A study was conducted using Plackett-Burman design to the statistical screening of seven growth medium components viz. glucose, malt, peptone, ammonium sulphate (NH4)2SO4), magnesium sulphate heptahydrate (MgSO4.7H2O), monopotassium  phosphate (KH2PO4),  and ferrous sulphate heptahydrate (FeSO4.7H2O) by employing microbial stains Trichoderma reesei MTCC No. 164 and Aspergillus tamarii MTCC No. 8841 on alkali pretreated and autoclaved rice straw for comparative fermentable sugar (viz., xylose and glucose) estimation. All the experimental trials were conducted in triplicate and mean value was recorded for further analysis in identification of significant factor using ANOVA analysis at α value of 0.05 and 95% confidence level. In both of A. tamarii, out of seven growth medium component used, monopotassium phosphate and glucose were found as the significant factor responsible for the release of maximum xylose concentration of 36.03 mg/g whilst ammonium sulphate was identified as a key medium component for the release of the maximum glucose concentration of 29.84 mg/g.In T.reesei broth, out of seven growth medium component used magnesium sulphate heptahydrate, glucose and peptone were screened out as significant medium component responsible for the release of maximum xylose concentration of 22.15 mg/g whilst malt, ammonium sulphate and  glucose were found responsible for the release of the maximum glucose concentration of 24.31 mg/g. The microbial growth media composition used was found to be more effective for A. tamarii as compared to T.reesei for production of fermentable sugars from alkali pretreated rice straw. Thus the data of the present study establishes optimum  valus of selected microbial growth medium parameters responsible for enhanced yiled of fermentable sugar.

KEYWORDS:

Trichoderma reesei, Aspergillus tamarii, Medium component, Rice straw, Placket Burman design, Glucose, Xylose.

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Gupta V. C, Singh M, Prasad S. Comparative Fermentable Sugar Yield from Pretreated Rice Straw by Trichoderma reseei and Aspergillus tamarii Using Plackett–Burman Method. Biosc.Biotech.Res.Comm. 2019;12(4).

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Gupta V. C, Singh M, Prasad S. Comparative Fermentable Sugar Yield from Pretreated Rice Straw by Trichoderma reseei and Aspergillus tamarii Using Plackett–Burman Method. Biosc.Biotech.Res.Comm. 2019;12(4). Available from: https://bit.ly/2Ck3Ihn

INTRODUCTION

Currently, lignocellulosic biomass is being exploited extensively by many researchers across the globe for developing cleaner and sustainable energy as an alternative to the fossil fuel system (Prasad et al., 2007). Rice is an important food crop in India which is being produced at an annual rate of 106.54 MT producing 160 MT of rice straw at a ratio of 1:1.15 (Singh et al., 2008).  Due to lack of any suitable utilization system of this huge volume of rice straw farmers generally tend to either burn it in open field or left it in the field as a soil conditioner which ultimately affecting human health severely due to air pollution caused by burning of it and increased methane emission respectively (Singh et al., 2014).

Rice straw may be utilized for producing fuel ethanol since its structural component of the primary cell wall contains cellulose from around 32 to 47%, hemicellulose from 19 to 27% and lignin around 5 to 24% (Garrote et al. 2002; Parameswaran et al. 2010; Zamora and Crispín 1995). The cellulose and hemicellulose is an important constituent of rice straw and can be converted into simple monomeric carbohydrates such as glucose and xylose by effective pretreatment and hydrolysis methods (   Sarkar et al. 2012   Cekmecelioglu and Demirci 2018).

Pretreatment steps play an important role in liberating lignin and hemicellulose compounds making cellulose and hemicellulose more accessible for enzymatic conversion into fermentable sugars (Jamaldheen et al. 2019; Nigam and Singh 2011). Alkali pretreatment of rice straw has been reported as one of the most efficient method of rice straw pretreatment (Sathendra et al. 2019; Singh et al. 2011). Screening an important medium component affecting the production of fermentable sugar by Placket Buman design methods14 proves to be an efficient way as compared to one factor at the time method. Statistical significance of individual factor may be estimated using placket Burman design methods in a less number of experiments (    Singh and Bishnoi 2012    Thi et al. 2018).

In the present research, the medium component affecting the production of fermentable sugar was studied using Placket-Barman design method. The individual factors were screened based on the statistical significance of each medium component at alpha value of 0.05 or 95% confidence level.

MATERIALS AND METHODS

Microorganism and Inoculum Preparation

Trichoderma reesei and Aspergillus tamarii, used for the release of glucose and xylose from cellulose and hemicellulose of alkali pretreated rice straw. Both the microbial cultures were procured from Microbial Type Culture Collection Center assigned accession no., MTCC 164 and MTCC 8841, at Chandigarh, India. The obtained cultures were maintained on potato dextrose agar (PDA) slants at 4°C before inoculating culture with the substrate. For preparing inoculum Trichoderma reesei and Aspergillus tamarii were sub-cultured using autoclaved Malt Extract Agar medium and Czapek Yeast Extract Agar medium at 121°C at 15 psi for 20 minutes, respectively. The inoculated slant cultures were incubated at 28° C for 7 days after that the inoculum was obtained by adding 5 ml of sterile water to slant cultures and scrubbing the surface of slant using sterile inoculating loop wire (  Kadowaki etal. 1997 Wanger et al. 2018).

Substrate Preparation and Alkali Pretreatment

The rice straw was collected from the local farmer’s field near to Greater Noida, U.P.  The obtained rice straw was cut into pieces of size 1 cm long after that the substrate was washed with tap water to remove any dust particle attached with rice straw. The substrate was kept for drying in a hot air oven at 45° C (Sathendra et al. 2019; Zhu et al. 1995). The dried rice straw was ground and sieved further to produce powdered raw material of size 30-50 mm. The powdered rice straw substrate was pretreated using the dilute sodium hydroxide and autoclaving after that10 gram of substrate was mixed with 80 ml of 0.5 M NaOH solution (Khanahmadi et al.2018; Zhu et al. 2006). The mixture was autoclaved 121°C at 15 psi for 10 minutes. After cooling the residue was washed thoroughly with distilled water until neutral pH is reached and oven dried at 65°C and weighed for further enzymatic hydrolysis.

Screening of medium component affecting the production of xylose and glucose using Plackett–Burman design

Screening of significant medium component affecting at the utmost level the microbial enzymatic hydrolysis of pretreated rice straw was performed using Plackett–Burman design (Thi et al. 2018; Plackett and Burman 1946). The following Identified independent variables including C-source, N-source, and some inorganic ions, were selected for analysis viz. Malt extract (X1), Ammonium sulphate (X2), KH2PO4 (X3), MgSO4.7H2O (X4), Glucose (X5), FeSO4.7H2O (X6) and Peptone (X7) (Mandels et al. 1974; Aggarwal et al. 2017). Each independent variable was examined at two levels, a high (+1) and a low (-1) level indicating concentration range of each parameter (Table 1). The screening experiments were conducted as per Plackett–Burman design matrix (Table 2). Inoculum at a rate of 3 ml each of Trichodermareeseiand Aspergillustamarii was transferred into separate Erlenmeyer flask of 250 ml capacity each containing the 50 ml of microbial growth medium along with 5 gram of alkali pretreated rice straw. The pH of the medium was adjusted to 6.5. The sample containing Erlenmeyer flasks were incubated at 28° C in a rotary shaker for 7 days at 160 rpm solution (Zhu et al. 2015).  All experiments were carried out in the triplicate run.

Estimation of xylose and glucose

To express the accuracy, 1 ml of solution was collected from each flask at 24 hr interval for 4 days and was subjected to centrifugation at 8000 rpm at 4°C in a cooling centrifuge for 10 min, the supernatant obtained was further analyzed for xylose and glucose concentrations. The amount of xylose content in the hydrolysate was estimated by phloroglucinol method (  Miller 1959  Jamaldheen et al. 2019). The amount of glucose content in the hydrolysate was determined by DNS method (  Eberts et al. 1979 Sorn et al. 2019).

Estimation of xylose

The solution of phloroglucinol (‎C6H6O3), prepared by dissolving 0.5 gram of C6H6O3 in100 ml of glacial acetic acid (CH3COOH) and 10 ml of concentrated HCl. This forms a coloured reagent. 200 µl of supernatant was mixed with 5 ml of colour reagent and boiled for 5 min in boiling water bath. After cooling it, the absorbance was recorded in UV spectrophotometer at 554 nm, and the concentration of xylose was estimated against a standard xylose curve prepared ( Miller 1959 Jamaldheen et al. 2019).

Estimation of Glucose

About 0.5 ml of sample was drawn from every treatment into test tubes, and the volume was made up to 3ml using distilled water. 3 ml of 3,5-dintrosalycylic acid (DNSA) reagent was added to each sample, mixed well after which the sample tubes were heated in a water bath for 5 minutes and then cooled thereafter. After cooling the absorbance was recorded in UV spectrophotometer at 540 nm and the concentration of glucose was estimated against a standard glucose curve prepared ( Eberts et al. 1979 Sorn et al. 2019).

RESULTS AND DISCUSSION

Screening of medium components to enhanced fermentable sugars by PlackettBurman design

PlackettBurman design was used to efficiently select and screen critical nutritional variables of the growth medium of A. tamarii, and T. reesei contributed to enhanced fermentable sugars yield response from alkali pretreated rice straw by enzymatic hydrolysis under shake flask fermentation. The filamentous fungi such as Aspergillus sp. and Trichoderma sp. have been reported to produce cellulases and xylanases enzymes in a single fermentation system (Cekmecelioglu and Demirci 2018; Jampala et al. 2017).

Each independent medium component has been assigned at two concentration level and as low (-1) and high (+1) coded values in the Plackett-Burman design (Table 1). The composition of the medium used for microbial growth over alkali pretreated rice straw and individual medium component affecting the enhanced release of fermentable sugar by enzymatic hydrolysis were screened with 7 medium component in 8 experimental runs in which the productivity of xylose and glucose was recorded as yield response as shown in Table 2. All the experiments were carried out as per the Plackett-Burman design matrix, and each run was conducted in triplicate and mean value was recorded against each response (Table 2). Plackett-Burman design method has been reported as an effective statistical tool in screening various factor responsible for enhanced release of xylose and glucose from lignocellulosic biomass (Singhania et al. 2007).

Table 1:  Assigned concentration of variables at different levels in Plackett–Burman design

S.no. Medium component Code High value (+1) (% w/v) Lower value (-1) (% w/v)
1 Malt extract X1 0.75 0.0625
2 Ammonium sulphate X2 1 0.1
3 Monopotassium phosphate X3 1.25 0.083
4 Magnesium sulphate heptahydrate X4 0.075 0.0075
5 Glucose X5 2.5 0.0416
6 Ferrous sulphate heptahydrate X6 0.5 0.05
7 Peptone X7 1 0.25


Table 2: Plackett–Burman design for 7 components with coded values along with observed result for Xylose and Glucose as response

Run X1 X2 X3 X4 X5 X6 X7 Response (mg/g)
Xylose in A. tamarii broth Xylose in  T.reesei broth Glucose in A. tamarii broth Glucose in T.reesei broth
R1 1 -1 -1 1 -1 1 1 28.38 18.757 23.12 17.45
R2 1 1 -1 -1 1 -1 1 25.4 19.539 29.05 20.21
R3 1 1 1 -1 -1 1 -1 21.49 16.232 25.34 17.32
R4 -1 1 1 1 -1 -1 1 19.4 16.078 22.46 18.58
R5 1 -1 1 1 1 -1 -1 28.29 22.15 29.68 24.31
R6 -1 1 -1 1 1 1 -1 24.36 18.817 28.89 22.92
R7 -1 -1 1 -1 1 1 1 36.03 19.807 29.84 20.62
R8 -1 -1 -1 -1 -1 -1 -1 18.85 18.054 22.52 20.18

Effect of medium component on the yield of xylose and glucose in A. tamarii broth

Screening of nutrient medium component influencing the production of fermentable sugar especially pentose (xylose) and hexose (glucose) was analyzed and screened by Plackett-Burman experimental design. The result is presented in Table 3. Among seven nutrient components used in study, the Monopotassium Phosphate and Glucose were tested at 95.95% and 99.33% significance level respectively with p-value <0.05 found a significant factor influencing  the maximum xylose concentration release of 36.03 mg/g in the A.tamarii broth in run 7 (Table 2). Monopotassium Phosphate plays an important role in A. tamarii metabolism affecting significantly enhanced release of xylose sugar in fermentation broth (Zhao et al. 2018; Maciel et al. 2008). The glucose screened as important carbon source in medium tested at a significance level of 99.33% with p-value <0.05 contributed significantly towards the enhanced release of xylose in broth. Previous studies reported the effect of the synergistic action of glucose as a carbon source for enhanced release of xylose in A. tamarii broth when supplemented with alkali pretreated rice straw (Karunakaran et al. 2014). All other medium components were screened out as the less significant medium component for xylose release in broth found with p-value >/= 0.05 and significance level <95%.

The medium component ammonium sulphate was tested at confidence level of 99.7% with p  value<0.05 (Table 3) identified as an important source of inorganic nitrogen in the medium  towards enhanced release of glucose in broth with a concentration of 29.84 mg/g in run 7 (Table 2) by cellulolytic enzymatic action of A. tamarii shows good agreement with previous findings (Lee 2018; Gautam et al. 2011).

Effect of medium component on the yield of xylose and glucose in T.reesei broth

Enhanced yield of xylose in the T.reesei broth attributed to magnesium sulphate as a significant medium component with a significance level of 100% at  p value<0.05 (Table 4) indicating it as an important enzymatic cofactor (Fortkamp and Knob 2014) in releasing maximum xylose concentration of 22.15 mg/g in broth in run 5 (Table 2). Glucose identified as a significant medium component with significance level of 99.88% at p value<0.05 for maximum xylose release by enzymatic action of T.reesei may be due to the presence of pentose sugar arabinose because of rice straw pretreatment and hydrolysis which might have enhanced enzymatic activity of T.reesei leading to maximum  xylose release in the broth (Sorn et al. 2019; Xiong et al. 2004).Peptone with significance level tested at 97.37% at p-value <0.05  in the current study has also been identified as the best nitrogen source for the improved enzymatic action of T.reesei leading to the enhanced release of xylose in broth. Similar results were also reported previously for nitrogen source for the improved enzymatic action of T.reesei leading to the enhanced release of xylose (Gupta et al. 2018).

Glucose sugar concentration was recorded as highest with a value of 24.31 mg/g in run 5 by the enzymatic action of T.reesei (Table 2) with significant medium component screened and identified as malt extract, ammonium sulphate and glucose (Table 4). Each component tested at a significance level of 97.37%, 96.71 and 99.99% respectively at p-value <0.05. The other medium component were screened out as the less significant medium component with p-value >0.05. Secretion of active cellobiohydrolase I and the endoglucanase I catalytic core domain into the culture medium were induced greatly when the Trichoderma reesei was grown on glucose-containing medium (Cekmecelioglu and Demirci 2018; Nakari and Penttilä 1995) . Enhanced released of glucose in the broth by the enzymatic action of T.reesei may also be due to an additional 15-20% carbon source of malt extract along with glucose in the medium as reported previousaly (Bagewadi et al. 2017    and Jamaldheen et al. 2019).

Ammonium sulphate has been reported as best nitrogen source in an earlier study (Guoweia et al. 2011) towards the enhanced enzymatic activity of T.reesei  which finds good agreement in the current study with this factor tested at a confidence level of 99.92% (Table 4) towards the enhanced release of glucose in the broth by microbial enzymatic action.All the factors were tested at α value of 0.05 and 95 % confidence level. The significance of overall study was estimated using simple ANOVA test at the confidence level of 95%. The p-value at 95% confidence level was found to be 0.004 with F-value of 5.59 validating the experimental trail as significant (Table 5).

Table 3: Screening of significant medium component affecting fermentable sugar release in  A. tamarii broth as per Plackett-Burman design.

Fermentable
sugar
Medium
component
 (H)  (L) Difference Effect Mean Square F value P value Confidence 
level (%)
 

 

Xylose

X1 107.19 103.71 3.48 0.87 1.514 5.447 0.052 94.77
X2 105.74 105.16 0.58 0.145 0.042 0.151 0.709 29.11
X3 107.32 103.58 3.74 0.935 1.748 6.291 0.041 95.95
X4 104.15 106.8 -2.65 -0.663 0.878 3.159 0.119 88.12
X5 117.46 93.44 24.02 6.005 72.12 259.502 0.007 99.33
X6 107.19 103.71 3.48 0.87 1.514 5.447 0.052 94.77
X7 104.47 106.43 -1.96 -0.49 0.48 1.728 0.23 76.99
 

Glucose

X1 103.56 98.64 4.92 1.23 3.026 1.088 0.332 66.85
X2 90.65 111.55 -20.9 -5.225 54.601 19.641 0.003 99.7
X3 105.21 96.99 8.22 2.055 8.446 3.038 0.125 87.51
X4 100.43 101.77 -1.34 -0.335 0.224 0.081 0.785 21.55
X5 114.08 88.12 25.96 6.49 84.24 30.302 0.079 92.09
X6 110.26 91.94 18.32 4.58 41.953 2.205 0.181 81.88
X7 109.21 92.99 16.22 4.055 32.886 11.83 0.08 91.99


Table 4: Screening of significant medium component affecting fermentable sugar release in T.reeseibroth as per Plackett-Burman design

Fermentable
sugar
Medium
component
 (H)  (L) Difference Effect Mean Square F value P value Confidence 
level (%)
 

 

Xylose

X1 79.29 82.3 -3.01 -0.753 1.133 1.179 0.314 68.64
X2 79.03 82.56 -3.53 -0.883 1.558 1.621 0.244 75.64
X3 80.83 80.76 0.07 0.018 0.001 0.001 0.981 1.94
X4 183.26 78.33 104.93 26.233 1376.288 1432.1 0 100
X5 88.06 73.53 14.53 3.633 26.39 27.461 0.001 99.88
X6 78.31 83.28 -4.97 -1.243 3.088 3.213 0.116 88.38
X7 76.86 84.64 -7.78 -1.945 7.566 7.873 0.026 97.37
 

Glucose

X1 76.68 72.76 3.92 0.981 1.923 7.482 0.033 96.71
X2 70.67 78.77 -8.1 -2.026 8.205 31.927 0.001 99.92
X3 74.27 75.17 -0.9 -0.225 0.101 0.394 0.55 44.98
X4 75.8 73.63 2.17 0.543 0.589 2.29 0.174 82.6
X5 80.31 69.12 11.19 2.798 15.658 60.925 0 99.99
X6 73.61 75.82 -2.21 -0.552 0.609 2.371 0.168 83.25
X7 74.18 75.25 -1.07 -0.268 0.144 0.559 0.479 52.1


Table 5: Estimating significance of study using simple ANOVA analysis

Sum of Square (Total) Sum of Square (Within) Sum of Square (Between) Degree of Freedom F-value P-value Confidence level (%)
Numerator Denominator
713.393 445.940 267.455 3 28 5.597 0.004 99.61


CONCLUSION

The medium component used for growth of T.reesei and A.tamarii were statistically screened comparatively as per the Plackett-Burman design and effect of each independent medium component on the yield of glucose and xylose concentration in the final broth were estimated. Finally, it is concluded that the microbial strain  A.tamarii was found better than T.reesei for enzymatic hydrolysis of alkali pretreated rice straw leading to the enhanced release of fermentable sugar viz., xylose and glucose.

ACKNOWLEDGMENT

Authors sincerely acknowledge the support received from the management of IILM-CET for providing laboratory facilities in conducting experimental trails at Department of Biotechnology.

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