Bioscience Biotechnology Research Communications

An International  Peer Reviewed Refereed Open Access Journal

P-ISSN: 0974-6455 E-ISSN: 2321-4007

Bioscience Biotechnology Research Communications

An Open Access International Journal

Azra Rashid

Department of Microbiology, Sardar Bhagwan Singh PG Institute of Biomedical Sciences and Research, Affiliated to HNB Garwal University, Dehradun, India

Corresponding author Email: publication.cytogene@gmail.com

Article Publishing History

Received: 17/09/2018

Accepted After Revision: 19/12/2018

ABSTRACT:

In the present study, fecal samples were collected from different localities of Balawala, Dehradun city. Out of 87 isolates, 50% were E. coli, 25% were Klebsiella spp., 15% were Enterobacteriaceae spp. and 10% were Proteus spp. The isolates were then checked for antibiotic sensitivity. 50% strains were resistant for novabiocin, 25% were resistant for cefixime, 15% were resistant for clotrimazole and 10% were resistant for amoxicillin and most of these showed sensitivity against the antibiotics- Amikacin, amoxicillin, cefixime, cephalexin, ciprofloxacin, clotrimazole, gentamicin, novabiocin, ofloxacin and trimethoprim. In the minimum inhibitory concentration test, 50% of the isolates showed resistance against the antibiotics amoxicillin, ampicillin, streptomycin at different concentrations (8µg/ml, 16µg/ml, 32µg/ml, 64µg/ml and 128µg/ml respectuvely) and 50% showed sensitivity against the antibiotics cefoparazone sulbactum, meropenem and piperacillin tazobactum. In conclusion, the data of the present study determine the resistance profile of enteric pathogens in animal fecal samples and is helpful from the community infection point of view. The study provides some insight on the prevalence dynamics of enteric pathogens from animal fecal which can be helpful to clinicians to formulate proper antimicrobial therapy.

KEYWORDS:

Amikacin, Resistance Profile, Minnimum Inhibitory Concentration, Mrsa, Enterobacteriacea

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Rashid A. Isolation, Biochemical Characterization and Antibiotic Profiling of Members of Enterobacteriacea Isolated from Animal Fecal Matter. Biosc.Biotech.Res.Comm. 2018;11(4).


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Rashid A. Isolation, Biochemical Characterization and Antibiotic Profiling of Members of Enterobacteriacea Isolated from Animal Fecal Matter. Biosc.Biotech.Res.Comm. 2018;11(4). Available from: https://bit.ly/2kDltTO


Introduction

Bacterial resistance to antibiotics continues to curb our ability to treat, cure and control infectious diseases. Two organisms in particular that have become major public health threats are methicillin-resistant Staphylococcus aureus and penicillin-resistant Streptococcus pneumoniae. Resistance to aminocyclitol aminoglycosides is an important clinical problem since these antibiotics are widely used in the treatment of serious infections, (Larson et al., 1986; Garcia et al., 1989). Large quantities of enteric bacteria from animal fecal wastes can be released into rivers and lakes that serve as sources of water for drinking, recreation or irrigation. Fecal contamination is considered to be main contributor of enteric pathogens to natural water sources. Infection originating from such sources specially diarrhea and typhoid fever. The family of Enetrobacteriaceae is accountable for these illnesses. The important members of Enterobacteriaceae are E. coli, Salmonella and Shigella. Amikacin has been the drug of choice for treating nosocomial infections refractory to other aminoglycosides (Gerding et al., 1990; Levine
et al., 1985, Kalita et al., 2016).

In recent years, resistance to amikacin due to production of 3’-aminoglycoside-phosphotransferases, 2” –adenyltransferases and aminoglycoside-6’- N-acetyltransferases has been reported (Hopkins et al., 1991; Shaw et al., 1993; Shimizu et al., 1985). Transmission of this microbe is usually through uncooked meats and eggs. The disease is spread via the fecal-oral route and requires very low cell numbers to initiate infection. In many cases, Shigella infection will lead to diarrhea accompanied by fever. Among the disease caused by poultry and other farms and their products some are often severe and sometimes lethal infection such as meningitis, endocarditis, urinary tract infections, septecimia, epidemic diarrhea of adults and children. Resistance are more commonly observed among isolates of animal fecal. The relatively intensive conditions under which animal are housed may be associated with greater disease potential and therefore a greater potential and therefore a greater tendency for antibiotic use of disease control (Bywater et al., 2004).

Resistance to antimicrobials and particularly multidrug resistance is an emerging problem in Enterobacteriaceae for developing and developed countries (Schwarz and White, 2005). Resistant microorganisms have emerged as a result of improper use of antibiotics in human health as well as in agricultural practices (Khachatourians, 1998). Investigators have reported evidence of some low-level resistance to antibiotics, but overall the bacteria studied were sensitive to most antibiotics prior to exposure (Datta and Hughes, 1983; Dancer, 1997).

Materials And Methods

Isolation of Enteric Pathogens: Sample was diluted appropriately in sterile saline by serial dilution method and then an appropriate dilution (0.1ml) was plated on selective media and incubated at 37 ˚C for 24 to 48 h (Pelcezar et al., 1986) and then observed for the growth.

Identification and characterization of Enteric pathogens

All suspected colonies on respective selective media were presumptive forms identified using identification scheme of Bergey’s manual (1997) that identifies bacteria on the basis of morphological, cultural and biochemical characteristics. The methods suggested in the microbiological methods were followed (Borrego and Figueras, 1997) for characterization of the bacterial isolates.

Antibiotic Susceptibility Test

Bacterial isolates viz., E. coli, Enterobacteriaceae, Klebsiella sps., Proteus sps. were screened for their sensitivity to antibiotics because the frequency of occurrence of these pathogens was very high. Multidrug resistant strains of these pathogens are emerging worldwide. Overnight growth of respective bacterial isolates was used for the sensitivity test. The Kirby Bauer modified disk diffusion technique was was used to determine the sensitivitity to antibiotics.The polydiscs (Micromaster Laboratories) were evenly distributed on sterile Mueller Hinton agar medium. Plates were then incubated at 37 ˚C for 24 h. The inhibition zone diameters were measured using meter scale. Inhibition zone diameters were compared with the standard inhibition zone for resistance, intermediate and susceptible character (Kalita et al., 2016).

Minimal Inhibitory Concentration (MIC): Minimum inhibitory concentration was determined according to the method described earlier by adding various concentrations of antibiotics (8-128 μg/ml) in Nutrient Broth. Further, 100 μl of inoculum was added to each tube and incubated the tubes at 37°C for 24 hours (Sharma et al., 2011).

Results And Discussion

Isolation of Enteric pathogens from Animal excreta

Samples of animals were collected aseptically and transported to the laboratory immediately for isolation of enteric pathogens on Mac-Conkey agar, Eosine methylene agar, Cystine–lactose–electrolyte-deficient agar plates. The plates were incubated for 14- 16 hours at 37°C and after incubation observations were made there are appearances of isolated colonies. The isolated colonies were further pure cultured by sub-streaking on Mac-Conkey agar plates (shown in Fig. 1). The culture thus obtained and the details of healthy animals and humans are given in Table 1

Table 1: Cultures obtained from Animal Fecal Matter
S. No Sample Number Growth On MacConkey Agar Morphology Motility
1. AH1 Small pink color colonies/ pink background Small pink color colonies and mucoid +ve
2. AH2 Pink color colonies/ pink background Small pink color colonies and mucoid +ve
3. AH3 Pink color colnies/ pink background Small pink color colonies and mucoid -ve
4. AH4 Pink color colonies/ pink background Small pink color colonies and mucoid -ve
5. AH5 Pink color colonies/ pink background Small pink color colonies and mucoid +ve
6. AH6 Pink color colonies/ pink background Small pink color colonies and mucoid -ve
7. AH7 Pink color colonies/ pink background Small pink color colonies and mucoid +ve
8. AH8 Pink color colonies/ pink background Small pink color colonies and mucoid +ve
9. AH9 Pink color colonies/ pink background Small pink color colonies and mucoid -ve
10. AH10 Yellow swarming colonies/ yellow background Yellow color colony and show motility +ve
11. AH11 Small pink color colonies/ pink background Small pink color colonies and mucoid +ve
12. AH12 Pink color colonies/ pink background Small pink color colonies and mucoid +ve
13. AH13 Pink color colonies/ pink background Small pink color colonies and mucoid +ve
14. AH14 Pink color colonies/ pink background Small pink color colonies and mucoid +ve
15. AH15 Yellow color colonies/ yellow background Gram –ve, non-motile and rod shaped -ve
16. AH16 Colorless colonies/ white background Gram –ve, non-motile and rod shaped +ve
17. AH17 Pink color colonies/ pink background Small pink color colonies and mucoid +ve
18. AH18 Pink color colonies/ pink background Small pink color colonies and mucoid +ve
19. AH19 Translucent gummy colonies/ pink background Gram –ve, non-motile and rod shaped +ve
20. AH20 Colorless colonies/ pink background Gram –ve, non-motile and rod shaped +ve
21. AH21 Pink color colonies/ pink background Small pink color colonies and mucoid +ve
22. AH22 Pink color colonies/ pink background Small pink color colonies and mucoid -ve
23. AH23 Translucent gummy colonies/ pink background Gram –ve, non-motile and rod shaped +ve
24. AH24 Colorless colonies/ pink background Gram –ve, non-motile and rod shaped +ve
25. AH25 Yellowish gummy colonies/ yellow background Gram –ve, non-motile and rod shaped -ve
26. AH26 Colorless colonies/ white background Gram –ve, non-motile and rod shaped +ve
27. AH27 Colorless colonies/ white background Gram –ve, non-motile and rod shaped +ve
28. AH28 Pink color colonies/ pink background Small pink color colonies and mucoid +ve
29. AH29 Pink color colonies/ pink background Small pink color colonies and mucoid +ve
30. AH30 Pink color colonies/ pink background Small pink color colonies and mucoid +ve
31. AH31 Pink color colonies/ pink background Small pink color colonies and mucoid +ve
32. AH32 Pink color colonies/ pink background Small pink color colonies and mucoid +ve
33. AH33 Pink color colonies/ pink background Small pink color colonies and mucoid +ve
34. AH34 Pink color colonies/ pink background Small pink color colonies and mucoid -ve
35. AH35 Colorless colonies/ pink background Gram –ve, non-motile and rod shaped +ve
36. AH36 Pink color colonies/ pink background Small pink color colonies and mucoid +ve
37. AH37 Pink color colonies/ pink background Small pink color colonies and mucoid +ve
38. AH38 Pink color colonies/ pink background Small pink color colonies and mucoid +ve
39. AH39 Pink color colonies/ pink background Small pink color colonies and mucoid -ve
40. AH40 Pink color colonies/ pink background Small pink color colonies and mucoid +ve
41. AH41 Pink color colonies/ pink background Small pink color colonies and mucoid +ve
42. AH42 Pink color colonies/ pink background Small pink color colonies and mucoid +ve
43. AH43 Colorless colonies/ pink background Gram –ve, non-motile and rod shaped +ve
44. AH44 Pink color colonies/ pink background Small pink color colonies and mucoid +ve
44. AH44 Pink color colonies/ pink background Small pink color colonies and mucoid +ve
45. AH45 Colorless colonies/ pink background Gram –ve, non-motile and rod shaped +ve
46. AH46 Colorless colonies/ pink background Gram –ve, non-motile and rod shaped -ve
47. AH47 Translucent gummy colonies/ pink background Gram –ve, non-motile and rod shaped +ve
48. AH48 Pink color colonies/ pink background Small pink color colonies and mucoid +ve
49. AH49 Small orange color colonies/ pink background Gram –ve, non-motile and rod shaped +ve
50. AH50 Pink color colonies/ pink background Small pink color colonies and mucoid +ve
51. AH51 Colorless colonies/ pink background Gram –ve, non-motile and rod shaped +ve
52. AH52 Pink color colonies/ pink background Small pink color colonies and mucoid -ve
53. AH53 Pink color colonies/ pink background Small pink color colonies and mucoid +ve
54. AH54 Pink color colonies/ pink background Small pink color colonies and mucoid +ve
55. AH55 Translucent gummy colonies/ pink background Gram –ve, non-motile and rod shaped +ve
56. AH56 Pink color colonies/ pink background Small pink color colonies and mucoid +ve
57. AH57 Translucent gummy colonies/ pink background Gram –ve, non-motile and rod shaped +ve
58. AH58 Colorless colonies/ pink background Gram –ve, non-motile and rod shaped +ve
59. AH59 Pink color colonies/ pink background Small pink color colonies and mucoid +ve
60. AH60 Colorless colonies/ pink background Gram –ve, non-motile and rod shaped -ve
61. AH61 Pink color colonies/ pink background Small pink color colonies and mucoid +ve
62. AH62 Yellow swarming colonies/ yellow background Yellow color colony and show motility +ve
63. AH63 Pink color colonies/ pink background Small pink color colonies and mucoid +ve
64. AH64 Colorless colonies/ pink background Gram –ve, non-motile and rod shaped -ve
65. AH65 Pink color colonies/ pink background Small pink color colonies and mucoid +ve
66. AH66 Pink color colonies/ pink background Small pink color colonies and mucoid +ve
67. AH67 Yellow swarming colonies/ yellow background Yellow color colony and show motility +ve
68. AH68 Pink color colonies/ pink background Small pink color colonies and mucoid +ve
69. AH69 Colorless colonies/ pink background Gram –ve, non-motile and rod shaped +ve
70. AH70 Translucent gummy colonies/ white background Gram –ve, non-motile and rod shaped +ve
71. AH71 Pink color colonies/ pink background Small pink color colonies and mucoid +ve
72. AH72 Pink color colonies/ pink background Small pink color colonies and mucoid +ve
73. AH73 Pink color colonies/ pink background Small pink color colonies and mucoid +ve
74. AH74 Pink color colonies/ pink background Small pink color colonies and mucoid +ve
75. AH75 Pink color colonies/ pink background Small pink color colonies and mucoid +ve
76. AH76 Pink color colonies/ pink background Small pink color colonies and mucoid +ve
77. AH77 Pink color colonies/ pink background Small pink color colonies and mucoid +ve
78. AH78 Translucent gummy colonies/ yellow background Gram –ve, non-motile and rod shaped +ve
79. AH79 Pink color colonies/ pink background Small pink color colonies and mucoid +ve
80. AH80 Pink color colonies/ pink background Small pink color colonies and mucoid +ve
81. AH81 Pink color colonies/ pink background Small pink color colonies and mucoid +ve
82. AH82 Pink color colonies/ white background Small pink color colonies and mucoid +ve
83. AH83 Colorless colonies/ white background Gram –ve, non-motile and rod shaped +ve
84. AH84 Pink color colonies/ pink background Small pink color colonies and mucoid +ve
85. AH85 Pink color colonies/ pink background Small pink color colonies and mucoid +ve
86. AH86 Pink color colonies/ pink background Small pink color colonies and mucoid +ve
87. AH87 Pink color colonies/ pink background Small pink color colonies and mucoid +ve
Figure 1: Isolation of Enteric pathogen(a) Selective Isolation of Enteric Pathogens on Ma Conkey Agar (b)Microscopic Observation- Gram Negative Rods Figure 1: Isolation of Enteric pathogen(a) Selective Isolation of Enteric Pathogens on Ma Conkey Agar (b)Microscopic Observation- Gram Negative Rods
Figure 2: Cultures obtained from Animal Fecal Matter Figure 2: Cultures obtained from Animal Fecal Matter

In this study susceptibility pattern of pathogens liable for urinary tract infections in Poland to cogently used antimicrobial agents. A most entire study of 141 pathogens from hospital – acquired infections and 460 pathogens from community- acquired infections were isolated between July 1998 and May 1999. The most common ecological agent was E. coli (73.0 %), followed by Proteus spp. (8.9 %) and other species of Enterobacteriaceae (9.6 %). Few community infections were caused by Gram-positive cocci were isolated more frequently from a hospital setting (14.1 %) and the most common was Enterococcus spp. (8.5 %). Pseudomonas aeruginosa was found only among hospital isolates and was responsible for 10.7 % of infections. E.coli isolates from both community and hospital infections were highly affected to many antimicrobial agents with the explusion of those isolates generating elongated spectrum beta- lactamases (ESBLs). Of all Enterobacteriaceae tested, 38 strains (6.9 %) were able to generating ESBLs (Ahmed et al., 2011).

Graph 1: Antibiotic Sensitivity Of Selected Strain To â-Lactam Antibiotics Graph 1: Antibiotic Sensitivity Of Selected Strain To â-Lactam Antibiotics
Graph 2: Antibiotic Sensitivity Of Selected Strain To Non â-Lactam Antibiotics Graph 2: Antibiotic Sensitivity Of Selected Strain To Non â-Lactam Antibiotics
Graph 3: Antibiotic Sensitivity Of Selected Strain To Non â-Lactam Antibiotics Graph 3: Antibiotic Sensitivity Of Selected Strain To Non â-Lactam Antibiotics


Antibiotic Sensitivity Test

Antibiotic sensitivity of all the 87 isolates was determined against 10 antibiotics belonging to â-lactam and non â-lactam group. The antibiotics included are Amikacin, Amoxycillin, Cefixime, Cephalexin, Ciprofloxacin, Clotrimazole, Gentamycin, Kanamycin, Novabiocin and Ofloxacin. There sensitivity to different antibiotics is represented in Graph 1, 2 & 3.

Graph 4: MIC Concentration Against Different Antibiotics for E.Coli Graph 4: MIC Concentration Against Different Antibiotics for E.Coli
Graph 5: MIC Concentration Against Different Antibiotics for Enterobacteriaceae sps. Graph 5: MIC Concentration Against Different Antibiotics for Enterobacteriaceae sps.
Graph 6: MIC Concentration Against Different Antibiotics for Klebsiella sps. Graph 6: MIC Concentration Against Different Antibiotics for Klebsiella sps.

According to Ergin & Mutlu, 197 bacterial isolates from Sudanese patients with diarrhea or urinary tract infections. Shigella dysenteriae type 1 and enteropathogenic E. coli Showed high resistance rates against the commonly used antimicrobial agents: ampicillin, chloramphenocol, amoxycillin, co-trimoxazole, tetracycline, malidixic acid, sulfonamide and neomycin. The uropathogens wre completely sensitive to ciprofloxacin. Resistance to tetracycline, amoxicillin, ampicillin, cotrimoxazole and sulfonamide was the most frequent pattern. The common urinary tract pathogens Klebsiella pneumonia, E. coli and Proteus mirabilis showed high rates of resistance to ampicilin, co-trimoxazole, amoxicillin, tetracycline, trimethoprim, sulfonamide, streptomycin and carbenicillin.

Graph 7: MIC Concentration Against Different Antibiotics for Proteus sps. Graph 7: MIC Concentration Against Different Antibiotics for Proteus sps.


Minimum Inhibitory Concentration

Of all 87 samples 25 samples were selected for carrying out MIC of Amoxycillin, Ampicillin, Pipracillin tazobactum, Streptomycin, Meropenem and Cefoparazone sulbactum. The MIC was conducted at different concentrations like (8µg, 16µg, 32µg, 64µg and 128µg). Maximum isolates showed resistance against Amoxycillin and minimum against Meropenem and Cefoparazone sulbactum. In decresing order of resistance antibiotics can be placed as Amoxycillin>Ampicillin>Streptomycin>Pipracillintazobactum>Meropenem>Cefoparazone sulbactum. The MIC result of isolates is shown in Graph. 4, 5, 6 & 7.

In this study they determined the distribution rates of Pseudomonas aeuroginosa in clinics and its resistance to antibiotics. The antibiotic resistance rates were detected by minimal inhibitory concentration (MIC). The clinical and specimen distribution properties of Pseudomonas were evaluated based on their resistance pattern. Pseudomonas was the fourth common bacteria in all isolates. Tracheal aspirates, sputum and wound, pus were important sources for Pseudomonas aeruginosa isolation in intensive and nonintensive care units of surgery wards (SW-ICU, SW-nonICU) (p<0.05). on the basis of MIC criteria, the resistance ratios of the isolates to cefriaxone, cefotaxime, ceftazidime, imipenem, ofloxacin and ciprofloxacin were 8.4%, 15.0%, 13.3%, 0.0%, 11.6 % and 8.3% respectively (Hryniewicz et al., 2001).

A wide range of pathogenic microorganisms can be transmitted to humans via water contaminated with fecal matter. These include enteropathogenic agents such as E. coli, Shigella, salmonella, enteroviruses and multicellular parasites as well as opportunistic pathogens like Pseudomonas aeruginosa, Klebsiella etc. Applications of antibiotics bring about an increase in resistance to antibiotics not only in pathogenic bacterial strains, but also in commensal bacteria (Luzzaro et al.,2001)

In the present study, the samples from different localities of Balawala were collected and total of 87 isolates were obtained from them and among these 50% were E. coli, 25% were Klebsiella spp., 15% were Enterobacteriaceae spp., and 10% were Proteus spp. The isolates were then identified on the basis of biochemical characteristics and the Klebsiella, E. coli, Proteus, Enterobacteria and Pseudomonas were isolated from the excreta of animals. Antibiotic resistance among the isolates was also evaluated using for antibiotics- amikacin, gentamicin, novabiocin, ofloxacin, ciprofloxacin, cephalexin, cefixime, amoxicillin, clotrimazole, trimethoprim, kanamycin, ampicillin, streptomycin, meropenem, piperacillin tazobactam and cefoparazone sulbactum.

In our study it has been seen that resistance was seen for novabiocin (50%), cefixime (25%), clotrimazole (15%) and amoxicillin (10%). It was also found to be sensitive for gentamicin, amikacin, kanamicin, trimethoprim, ciprofloxacin and ofloxacin. The MIC test was also conducted during this study those isolates are chosen for the MIC that showed more resistance efficacy. The MIC has been performed by chosing the different isolates in which following antibiotics was used viz amoxicillin, ampicillin, cefoparazone sulbactum, meropenem, piperacillin tazobactum and streptomycin. 50% of the isolates showed resistance among the antibiotic amoxicillin, ampicillin, streptomycin at different concentrations (8µg/ml, 16µg/ml, 32µg/ml, 64µg/ml and 128µg/ml) and 50% showed sensitivity against the antibiotic cefoparazone sulbactum, meropenem and piperacillin tazobactum. The high density of enteric pathogen and prevalence of multidrug resistant E. coli, Proteus and Kleibsiella in the fecal matter may pose severe public health risk.

Conclusion

In this study, we analysed the susceptibility pattern of different aminoglycosides in different locality of Balawala, strain collections of E. coliKlebsiella spp., Pseudomonas spp., Enterobacteriaceae spp. and Proteus spp. Enteric pathogens, which are of great concern since they are the most common causes of infection among humans and animals. Aminoglycosides represent an important class of antimicrobial agents. The prevalence of aminoglycoside resistance among Gram-negative bacteria in Dehradun is low, but an increased prevalence among clinical isolates of Escherichia coli has been observed during the last years. The most prevalent resistance mechanism is aminoglycoside modifying enzymes.

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